Webpages about Smoldyn and spatial simulation
- Brief description of Smoldyn
- Spatial simulation and simulators
- The importance of biological modeling
- What methods are available for spatial stochastic simulation?
- What software is available for particle-based simulation?
- Comparison table of particle-based simulators
- Questions and answers about Smoldyn
- Installing Smoldyn
- Smoldyn features
- Wierd behavior
- Smoldyn runtime
- Smoldyn accuracy
- Smoldyn bugs
- Establishing collaborations
- Advice on choosing simulation parameters
- Partitioning space
- Time steps
- Diffusion coefficients
- Molecule lists
- Surface interactions
- Reaction rates
- Research project ideas
- Algorithm details