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List of Publications

Systems biology

Andrews, Steven S., Tuan Dinh, and Adam P. Arkin. “Stochastic modeling of biochemical reaction networks.” Encyclopedia of Complexity and System Science, in press, 2007.

Andrews, Steven S. and Adam P. Arkin. “A mechanical explanation for cytoskeletal rings and helices in bacteria.” Biophys. J. 93:1872-1884, 2007. pdf

Andrews, Steven S. and Adam P. Arkin. “Systems biology: A switch for sex.” Curr. Biol. 17:R410, 2007. pdf (Dispatch about Ingolia and Murray, Curr. Biol. 17:668, 2007.)

Andrews, Steven S. and Adam P. Arkin. “Simulating cell biology.” Curr. Biol. 16:R523, 2006. pdf

Andrews, Steven S. and Adam P. Arkin. “Simulated niche partitioning by bacteria.”  Proc. Intl. Conf. on Complex Systems, 2005. pdf

Andrews, Steven S. “Serial rebinding of ligands to clustered receptors as exemplified by bacterial chemotaxis.” Phys. Biol. 2:111-122, 2005. pdf

Lipkow, Karen, Steven S. Andrews, and Dennis Bray.  “Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.”  J. Bact., 187:45-53, 2005. pdf  commentary

Adelman, Joshua L. and Steven S. Andrews. “Intracellular pattern formation: A spatial stochastic model of bacterial division site selection proteins MinCDE.” Proc. Santa Fe Inst. Summer School, 2004. pdf

Goldman, Jacki, Steven S. Andrews, and Dennis Bray. “Size and composition of membrane protein clusters predicted by Monte Carlo analysis.” Eur. Biophys. J. 33:506-512, 2004. pdf

Andrews, Steven S. and Dennis Bray. “Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.” Phys. Biol., 1:137-151, 2004. pdf Supp1 Supp2  Chosen as one of six Physical Biology highlights of 2004-2005.

Book review

Andrews, Steven S. Review of System Modeling in Cellular Biology: From Concepts to Nuts and Bolts, edited by Zoltan Szallasi, Jörg Stelling, and Vipul Periwal. The Quarterly Review of Biology, 82:145, 2007. pdf

Spectroscopy

Andrews, Steven S. “Using rotational averaging to calculate the bulk response of isotropic and anisotropic samples from molecular parameters” J. Chem. Ed. 81:877-885, 2004. pdf

Treynor, Thomas P., Steven S. Andrews, and Steven G. Boxer. “Intervalence band Stark effect of the special pair radical cation in bacterial photosynthetic reaction centers.” J. Phys. Chem. B 107:11230-11239, 2003. pdf

Andrews, Steven S. and Steven G. Boxer. “Vibrational Stark effects of nitriles. II. Physical origins of effects from experiment and perturbation models.” J. Phys. Chem. A 106:469-477, 2002. pdf

Andrews, Steven S. and Steven G. Boxer. “Analysis of noise for rapid-scan and step-scan FTIR difference spectroscopy.” Appl. Spectrosc. 55:1161-1165, 2001. pdf

Andrews, Steven S. and Steven G. Boxer. “Vibrational Stark effects of nitriles. I. Methods and experimental results.” J. Phys. Chem. A 104:11853-11863, 2000. pdf

Andrews, Steven S. and Steven G. Boxer. “A liquid nitrogen immersion cryostat for optical measurements.” Rev. Sci. Instrum. 71:3567-3569, 2000. pdf

Park, Eun Sun, Steven S. Andrews, Robert B. Hu, and Steven G. Boxer. “Vibrational Stark spectroscopy in proteins: A probe and calibration for electrostatic fields.” J. Phys. Chem. B 103:9813-9817, 1999. pdf

Oceanography

Zafiriou, Oliver C., Steven S. Andrews, and Wei Wang. “Concordant estimates of oceanic carbon monoxide source and sink processes in the Pacific yield a balanced global ‘blue-water’ CO budget.” Global Biogeochem. Cycles 17:1015, 2003.   pdf

Xie, Huixiang, Steven S. Andrews, William R. Martin, Jared Miller, Lori Ziolkowski, Craig D. Taylor, and Oliver C. Zafiriou. “Validated methods for sampling and headspace analysis of carbon monoxide in seawater.” Mar. Chem. 77:93-108, 2002. pdf

Andrews, Steven S., Sigalit Caron, and Oliver C. Zafiriou. “Photochemical oxygen consumption in marine waters: A major sink for colored dissolved organic matter?” Limnol. Oceanog. 45:267-277, 2000. pdf

Weiss, Peter S., Steven S. Andrews, James E. Johnson, and Oliver C. Zafiriou. “Photoproduction of carbonyl sulfide in South Pacific Ocean waters as a function of irradiation wavelength.” Geophys. Res. Lett. 22:215-218, 1995. pdf

Polymer Theory

Lipson, J.E.G. and S.S. Andrews. “A Born-Green-Yvon integral equation treatment of a compressible fluid.” J. Chem. Phys. 96:1426-1434, 1992. pdf


© Steven Andrews, 2007.  All rights reserved.  Last modified 9/18/07.