Andrews, Steven S., Richard C. Yu, and Roger Brent. "Cell signaling
dose response alignment may arise from cooperativity or
pull-up/pull-down mechanisms" Molecular
Systems Biology, submitted 2008.
Andrews, Steven S., Roger Brent, and Adam P. Arkin. "Detailed
simulations of cell biology with Smoldyn 2.0" Nature Biotechnol. submitted, 2008.
Yu, Richard C., Orna Resnekov, Pia Abola, Steven S. Andrews, Kirsten
R. Benjamin, Jehoshua Bruck, Ian Burbulis, Alejandro Colman-Lerner,
Drew Endy, Andrew Gordon, Mark Holl, Larry Lok, Robert Maxwell, Gustavo
Pesce, Eduard Serra, Richard D. Smith, Ty Thomson, Annie Tsong, and
Roger Brent. “The Alpha project, a model system for systems biology
research” IEEE Sys. Biol. in
press, 2008. pdf
Andrews, Steven S., Tuan Dinh, and Adam P. Arkin. “Stochastic
modeling of biochemical reaction networks.” Encyclopedia of Complexity and System
Science, in press, 2008. pdf
Andrews, Steven S. and Adam P. Arkin. “A mechanical explanation
for cytoskeletal rings and helices in bacteria.” Biophys. J. 93:1872-1884, 2007. pdf Supp correction
Andrews, Steven S. and Adam P. Arkin. “Systems biology: A switch for
sex.” Curr. Biol. 17:R410,
2007. pdf (Dispatch about
Ingolia and Murray, Curr. Biol.
17:668, 2007.)
Andrews, Steven S. and Adam P. Arkin. “Simulating cell biology.” Curr. Biol. 16:R523, 2006. pdf
Andrews, Steven S. and Adam P. Arkin. “Simulated niche partitioning
by bacteria.” Proc. Intl.
Conf.
on Complex Systems, 2005. pdf
Andrews, Steven S. “Serial rebinding
of ligands to clustered receptors as exemplified by bacterial
chemotaxis.” Phys. Biol.
2:111-122, 2005. pdf
Lipkow, Karen, Steven S. Andrews, and Dennis Bray. “Simulated
diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.” J. Bact., 187:45-53, 2005. pdf commentary
Adelman, Joshua L. and Steven S. Andrews. “Intracellular pattern
formation: A spatial stochastic model of bacterial division site
selection proteins MinCDE.” Proc.
Santa Fe Inst. Summer School, 2004. pdf
Goldman, Jacki, Steven S. Andrews, and Dennis Bray. “Size and
composition of membrane protein clusters predicted by Monte Carlo
analysis.” Eur. Biophys. J.
33:506-512, 2004. pdf
Andrews, Steven S. and Dennis Bray. “Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.” Phys. Biol., 1:137-151, 2004. pdf Supp1 Supp2 Chosen as one of six Physical Biology highlights of 2004-2005. Single most cited paper in Physical Biology between 2004 (journal inception) and 2008.
Andrews, Steven S. Review of System
Modeling in Cellular Biology: From Concepts to Nuts and Bolts,
edited by Zoltan Szallasi, Jörg Stelling, and Vipul Periwal. The Quarterly Review of
Biology, 82:145, 2007. pdf
Andrews, Steven S. “Using rotational averaging to calculate the bulk response of isotropic and anisotropic samples from molecular parameters” J. Chem. Ed. 81:877-885, 2004. pdf
Treynor, Thomas P., Steven S. Andrews, and Steven G. Boxer.
“Intervalence
band Stark effect of the special pair radical cation in bacterial
photosynthetic reaction centers.” J.
Phys. Chem. B 107:11230-11239, 2003. pdf
Andrews, Steven S. and Steven G. Boxer. “Vibrational Stark effects of nitriles. II. Physical origins of effects from experiment and perturbation models.” J. Phys. Chem. A 106:469-477, 2002. pdf
Andrews, Steven S. and Steven G. Boxer. “Analysis of noise for rapid-scan and step-scan FTIR difference spectroscopy.” Appl. Spectrosc. 55:1161-1165, 2001. pdf
Andrews, Steven S. and Steven G. Boxer. “Vibrational Stark effects of nitriles. I. Methods and experimental results.” J. Phys. Chem. A 104:11853-11863, 2000. pdf
Andrews, Steven S. and Steven G. Boxer. “A liquid nitrogen immersion cryostat for optical measurements.” Rev. Sci. Instrum. 71:3567-3569, 2000. pdf
Park, Eun Sun, Steven S. Andrews, Robert B. Hu, and Steven G. Boxer. “Vibrational Stark spectroscopy in proteins: A probe and calibration for electrostatic fields.” J. Phys. Chem. B 103:9813-9817, 1999. pdf
Zafiriou, Oliver C., Steven S. Andrews, and Wei Wang. “Concordant estimates of oceanic carbon monoxide source and sink processes in the Pacific yield a balanced global ‘blue-water’ CO budget.” Global Biogeochem. Cycles 17:1015, 2003. pdf
Xie, Huixiang, Steven S. Andrews, William R. Martin, Jared Miller, Lori Ziolkowski, Craig D. Taylor, and Oliver C. Zafiriou. “Validated methods for sampling and headspace analysis of carbon monoxide in seawater.” Mar. Chem. 77:93-108, 2002. pdf
Andrews, Steven S., Sigalit Caron, and Oliver C. Zafiriou. “Photochemical oxygen consumption in marine waters: A major sink for colored dissolved organic matter?” Limnol. Oceanog. 45:267-277, 2000. pdf
Weiss, Peter S., Steven S. Andrews, James E. Johnson, and Oliver C.
Zafiriou. “Photoproduction of carbonyl sulfide in South Pacific
Ocean waters as a function of irradiation wavelength.” Geophys.
Res. Lett. 22:215-218, 1995. pdf
Lipson, J.E.G. and S.S. Andrews. “A Born-Green-Yvon integral
equation treatment of a compressible fluid.” J. Chem. Phys.
96:1426-1434, 1992. pdf