# Simple bouncing molecules with surfaces
# units microns and seconds

define OUTFILE FILEROOTout.txt

graphics opengl
graphic_iter 1

dim 3
species red
max_mol 100000
boxsize 1

difc red 3

color red 1 0 0
display_size red 1
frame_thickness 0

time_start 0
time_stop 100
time_step 0.1

boundaries 0 -10 10
boundaries 1 -10 10
boundaries 2 -10 10

max_surface 1

start_surface bounds
unbounded_emitter front red 1 -4.5 0 0
color both 0.5 0.5 0.5
polygon both edge
read_file sphere.txt
end_surface

output_files OUTFILE stdout

cmd e pointsource red 500 -4.5 0 0
cmd n 10 molcount stdout
cmd @ 0.29 molcountspace red 0 -10 10 20 -1 1 -1 1 1 OUTFILE
cmd @ 99.99 molcountspace red 0 -10 10 20 -1 1 -1 1 1 OUTFILE


end_file