# File for figure 7
# units micons, seconds

define SOURCE1	A 5	1 3 2.5
define SOURCE2	A 10	3.5 0.5 2.5
define OUTFILE1 FILEROOTout1.txt
define OUTFILE2 FILEROOTout2.txt

graphics opengl
graphic_iter 10

dim 3
names A
max_mol 10000
boxsize 1

difc all(solution) 1

color A(all) 1 0 0

time_start 0
time_stop 100
time_step 0.01

boundaries 0 0 5
boundaries 1 0 5
boundaries 2 0 5

max_surface 1

start_surface
name walls
color both 0 0 0
polygon both edge
read_file CubeSurface.txt
unbounded_emitter front SOURCE1
unbounded_emitter front SOURCE2
end_surface

output_files OUTFILE1 OUTFILE2

cmd e pointsource SOURCE1
cmd e pointsource SOURCE2
cmd e molcountspace A 0  0 5  20  2.25 2.75  2.25 2.75  1000 OUTFILE1
cmd a listmols OUTFILE2

end_file