*** TIME INFORMATION ***
Total time: 1.00E-4
dt: 1.00E-8
dt_spring: 1.00E-9
dt_data: 1.00E-5
dt_image: 1.00E-5

*** SYSTEM INFORMATION ***
L_x: 4.4963999999999995
L_y: 4.4963999999999995
L_z_out: 0.01
L_z_in: 4.4963999999999995
Partition Nx: 20
Partition Ny: 20
Partition Nz: 20

*** MOLECULES ***

MOLECULE: "Enzyme" Intracellular Number 909 Site_Types 1 Total_Sites 1 Total_Links 0 is2D false
{
     TYPE: Name "Enzyme" Radius 2.000 D 10.000 Color RED STATES "Active" 

     SITE 0 : Intracellular : Initial State 'Active'
          TYPE: Name "Enzyme" Radius 2.000 D 10.000 Color RED STATES "Active" 
          x 0.000 y 9.000 z 18.800 


     Initial_Positions: Random
}

MOLECULE: "Substrate" Intracellular Number 9091 Site_Types 1 Total_Sites 1 Total_Links 0 is2D false
{
     TYPE: Name "Substrate" Radius 2.000 D 10.000 Color CYAN STATES "Unphos" "Phos" 

     SITE 0 : Intracellular : Initial State 'Unphos'
          TYPE: Name "Substrate" Radius 2.000 D 10.000 Color CYAN STATES "Unphos" "Phos" 
          x 0.000 y 6.150 z 15.850 


     Initial_Positions: Random
}

*** CREATION/DECAY REACTIONS ***

'Enzyme' : kcreate 0.0 kdecay 0.0
'Substrate' : kcreate 0.0 kdecay 0.0

*** STATE TRANSITION REACTIONS ***

'Substrate Phosphorylation' ::     'Substrate' : 'Substrate' : 'Unphos' --> 'Phos'  Rate 1.0  Condition Bound 'Enzyme' : 'Enzyme' : 'Any_State'

*** ALLOSTERIC REACTIONS ***


*** BIMOLECULAR BINDING REACTIONS ***

'E-S Binding'       'Enzyme' : 'Enzyme' : 'Any_State'  +  'Substrate' : 'Substrate' : 'Unphos'  kon 5.88  koff 1.0  Bond_Length 2.0
'E-P Unbinding'       'Enzyme' : 'Enzyme' : 'Any_State'  +  'Substrate' : 'Substrate' : 'Phos'  kon 0.0  koff 10000.0  Bond_Length 2.0

*** MOLECULE COUNTERS ***

'Enzyme' : Measure Total Free Bound 
'Substrate' : Measure Total Free Bound 

*** STATE COUNTERS ***

'Enzyme' : 'Enzyme' : 'Active' : Measure Total Free Bound 
'Substrate' : 'Substrate' : 'Unphos' : Measure Total Free Bound 
'Substrate' : 'Substrate' : 'Phos' : Measure Total Free Bound 

*** BOND COUNTERS ***

'E-S Binding' : Counted
'E-P Unbinding' : Counted

*** SITE PROPERTY COUNTERS ***

'Enzyme' Site 0 :  Track Properties true
'Substrate' Site 0 :  Track Properties true

*** CLUSTER COUNTERS ***

Track_Clusters: false

*** SYSTEM ANNOTATIONS ***


*** MOLECULE ANNOTATIONS ***

Annotation: 'Enzyme'
{
}

Annotation: 'Substrate'
{
}

*** REACTION ANNOTATIONS ***

Annotation: 'Substrate Phosphorylation'
{
}

Annotation: 'E-S Binding'
{
}

Annotation: 'E-P Unbinding'
{
}