# Michaelis-Menten reaction # units: micron and second graphics none dim 3 names E S ES P max_mol 11000 molperbox 3 accuracy 10 difc E 10 difc S 10 difc ES 10 difc P 10 time_start 0 time_stop 10 time_step 0.001 boundaries 0 0 4.4964 p boundaries 1 0 4.4964 p boundaries 2 0 4.4964 p molecule_lists Elist Slist ESlist Plist mol_list E Elist mol_list S Slist mol_list ES ESlist mol_list P Plist output_files benchmarkout.txt cmd i 0 100 0.01 molcount benchmarkout.txt # 10 E/vol and 100 S/vol mol 909 E u u u mol 9091 S u u u reaction fwd E + S -> ES 0.01 reaction back ES -> E + S 1 reaction prod ES -> E + P 1 product_placement back pgemmax 0.2 end_file