# This file just checks and illustrates the meansqrdisp2 command define MOLS 500 define MAXMOL 550 graphics opengl rand_seed 1 dim 2 species kinase phosphatase protein proteinp max_mol MAXMOL difc kinase 0 difc phosphatase 0 difc protein 10 difc proteinp 10 color kinase 1 0 0 color phosphatase 0 1 0 color protein 0 0 0.5 color proteinp 0.5 0.5 1 display_size all 2 time_start 0 time_stop 1000 time_step 0.02 boundaries 0 0 100 r boundaries 1 0 100 r mol 1 kinase 20 50 mol 1 phosphatase 70 50 mol MOLS protein u u reaction rk kinase + protein -> kinase + proteinp 500 reaction rp phosphatase + proteinp -> phosphatase + protein 500 output_files stdout cmd e meansqrdisp2 proteinp 0 c r MOLS 4 stdout end_file